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Project/Molecular dynamics and Biology

8. Reference[Characteristics study of TATA box through comparison of elastic modulus according to DNA sequence]

by sonpang 2021. 11. 12.
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Reference

[1] NAMD User's Guide Version CVS-2016-09-08, M.Bhandarkar외 공저

[2] Seungho Choe and Sean X.Sun, “The elasticity of alpha-helices”, The Journal of Chemical Physics(2005)7

[3] VMD User’s Guide, NIH Biomedical Research Center for Macromolecular Modeling and Bioinformatics, December 23, 2014

[4] 여영구, “쉽게배우는 MATLAB 입문과 활용 3판”, 아진, 2014

[5] 국가나노기술정책센터(나노물질 시뮬레이션기술)

[6] 구조 생물 정보학 연구 협동 조합(RCSB, PDBe, PDBj, BMRB)(DNA의 활용 연구 및 DNA를 구현하는 방법 탐색)

[7] VMD-L Mailing List(연구자, 교수님들의 의논을 토대로 VMD, NAMD의 활용도를 높였다.)

[8] Moore, M. J. and N. J. Proudfoot. 2009. Pre-mRNA Processing Reaches Back to Transcription and Ahead to Translation. Cell. 136 (4): 688-700. Cited in Thomas, B. 2010. Cell systems—what's really under the hood continues to drop jaws. Journal of Creation. 24 (2): 13-15.

[9] Twisting and stretching single DNA molecules, Strick, Jean-Francois Allemand,

Croquette, Bensimo, Progress in Biophysics & Molecular Biology, 2000

 

[8] Ionic effects on the elasticity of single DNA molecules : Communicated by Brian W. Matthews, University of Oregon, Eugene, OR, April 7, 1997 (received for review February 4, 1997)

[9] Biophysical Chemistry : The main role of the sequence-dependent DNA elasticity in determining the free energy of nucleosome formation on telomeric DNAs

 

[10] Picture : TATA box의 염기서열 : Apawnilation - Own work, CC BY-SA 4.0,

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